FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008008945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008008945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96057959
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCT3938490.41001183462580126No Hit
CCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGTCCCGGC1806070.1880187772884077No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCACAGGATCTCGTATG1771410.18441053905798685TruSeq Adapter, Index 6 (97% over 37bp)
CCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGT1747730.18194536071706457No Hit
GTGGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTC1119480.11654213889762118No Hit
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC977160.10172608393647006No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)