FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008008963

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008008963
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74700701
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCT3590180.4806086090142581No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTGAACCATCTCGTATG2069430.27702952881258774TruSeq Adapter, Index 9 (97% over 36bp)
CCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGACG1437990.19250020157106693No Hit
GCGGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCC1375040.18407323915206633No Hit
GCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAG1317530.17637451621772599No Hit
CCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGT1287480.17235179627029204No Hit
CCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGTCCCGGC1161230.1554510177889763No Hit
GTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTA1052910.14095048452088824No Hit
CCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGT1048840.1404056435829163No Hit
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC1025870.1373307059059593No Hit
GCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCGCGGGTAAA894070.11968696250922732No Hit
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGAC871780.11670305476785285No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTGAACCATCGCGTATG866870.11604576508592603TruSeq Adapter, Index 9 (97% over 36bp)
GTGGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTC864860.11577669130574825No Hit
CTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCTGGCGGAGCGCTGAGA843270.11288649085100286No Hit
GCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGGCCCTCGGATCGGCCC794340.10633635151563035No Hit
GTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCT774060.10362151755443365No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)