FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008008977

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008008977
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences102377529
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCT1440100.14066563376422184No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAAGGTCAATCTCGTATG1436230.14028762112435825TruSeq Adapter, Index 3 (97% over 38bp)
GTGGGGGGGAGGGCGCGCGACCCCGGTCGGCGCGCCCCGCTTCTTCGGTTC1158110.11312150345023465No Hit
CCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGTCCCGGC1071450.10465675529246267No Hit
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC1024080.10002976336731081No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)