FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008008987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008008987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70544993
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCT2182810.309420967693625No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCATCCTTATCTCGTATG1218230.17268837208616633TruSeq Adapter, Index 3 (97% over 36bp)
GCGGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCC1019020.14444965640580615No Hit
CCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGACG913420.1294804863046765No Hit
GCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAG890090.12617337703896292No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT868360.12309307338084222No Hit
CCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGT858620.1217123942446206No Hit
GTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTA834320.11826778407930383No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG772990.1095740416332595No Hit
CCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGTCCCGGC743220.1053540397969846No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)