FastQCFastQC Report
Sun 12 May 2024
EGAF00008009061

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008009061
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106820861
Total Bases5.4 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCC3204400.29997885899833737No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2867930.2684803298861259No Hit
CCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGTCCCGG2792740.2614414426036128No Hit
CCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGG2064810.19329651349655383No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTGTGAAATCTCGTAT1950140.18256171891368672TruSeq Adapter, Index 12 (97% over 38bp)
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC1150590.10771210690765728No Hit
CCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGGTCCCG1149880.10764564048964181No Hit
GTCCCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCG1108150.10373910017445001No Hit
GCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGG1071460.10030437781249489No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)