FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008009063

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008009063
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112942450
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC2685010.23773257973419207No Hit
CCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGCA1822410.16135739927724255No Hit
CCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGACG1693630.1499551320163499No Hit
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGAC1513650.13401958253960314No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAACAATGATCTCGTATG1419880.12571712407513738TruSeq Adapter, Index 23 (97% over 37bp)
CCCCGAGCCACCTTCCCCGCCGGGCCTTCCCAGCCGTCCCGGAGCCGGTCG1398220.1237993332002272No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTAC1315850.11650623835413522No Hit
GCCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCC1256440.11124603725171536No Hit
CCCGAGCCACCTTCCCCGCCGGGCCTTCCCAGCCGTCCCGGAGCCGGTCGC1253110.1109511968263483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)