FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008009081

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008009081
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104231308
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCGAGCCACCTTCCCCGCCGGGCCTTCCCAGCCGTCCCGGAGCCGGTCG2284020.21912993742724596No Hit
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC1584250.15199367928876034No Hit
CCCGAGCCACCTTCCCCGCCGGGCCTTCCCAGCCGTCCCGGAGCCGGTCGC1538480.14760248427468645No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCTTCACCATCTCGTATG1320520.1266913008517556TruSeq Adapter, Index 16 (97% over 38bp)
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGAC1197790.11491652776726163No Hit
CCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGACG1071200.10277142449368476No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)