FastQCFastQC Report
Mon 13 May 2024
EGAF00008009125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008009125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences151427889
Total Bases7.7 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCG3220680.21268737359206005No Hit
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGA2650790.17505295870564502No Hit
CCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC2478090.16364819032774075No Hit
CCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGAC2276300.15032237555659247No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)