FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008009143

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008009143
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101864863
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTGAACCATCTCGTATG1901040.1866237232361467TruSeq Adapter, Index 9 (97% over 36bp)
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC1805050.17720045429207518No Hit
CCCCGAGCCACCTTCCCCGCCGGGCCTTCCCAGCCGTCCCGGAGCCGGTCG1047760.10285784215897881No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTGAACCATCGCGTATG1043970.10248578059737831TruSeq Adapter, Index 9 (97% over 36bp)
CCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGCA1023080.1004350243910896No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)