FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008009175

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008009175
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences110820793
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGACG2316900.20906726411892756No Hit
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGAC2312480.20866842199910987No Hit
CCCCGAGCCACCTTCCCCGCCGGGCCTTCCCAGCCGTCCCGGAGCCGGTCG2227130.20096679871258455No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCGTAGTGATCTCGTATG2183830.1970595897107504TruSeq Adapter, Index 16 (97% over 37bp)
GTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACGAGGAGACGCCGGCGC1983710.1790016066750217No Hit
CCCGAGCCACCTTCCCCGCCGGGCCTTCCCAGCCGTCCCGGAGCCGGTCGC1862510.16806503090083463No Hit
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC1716210.15486353720641577No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1231670.11114069541083324No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)