FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008009177

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008009177
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111549638
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC3158880.28318155546143503No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCTACTATCTCGTATG2343150.21005446920410445TruSeq Adapter, Index 8 (97% over 36bp)
CCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGCA2330820.2089491316861109No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCTACTATCGCGTATG1233980.11062160506518184TruSeq Adapter, Index 8 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)