FastQCFastQC Report
Sun 12 May 2024
EGAF00008009242

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008009242
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences102245206
Total Bases5.2 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6969550.6816505411510443No Hit
GGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATCCA1619490.1583927563312846No Hit
AGGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATC1163370.11378235181021593No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)