FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008009273

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008009273
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109583098
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGACAACATCTCGTATG1611270.14703636139215556TruSeq Adapter, Index 22 (97% over 38bp)
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC1239080.11307218198923341No Hit
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGAC1131720.10327505068345486No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)