FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008009277

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008009277
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111641896
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCT1307800.11714240324259631No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTC1217020.10901104725057698No Hit
CCCCGAGCCACCTTCCCCGCCGGGCCTTCCCAGCCGTCCCGGAGCCGGTCG1155600.103509528358422No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)