FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008015463

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008015463
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6017391
Sequences flagged as poor quality0
Sequence length0-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
1360452.2608635536563937No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC117510.19528396941465165No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT77880.12942486203738465No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT77310.12847760765421426No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG67840.11273989009522566No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT63850.10610910941303299No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)