FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008015469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008015469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5028793
Sequences flagged as poor quality0
Sequence length0-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
1167862.3223465352421546No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC88770.17652347193451787No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT59970.11925326813014574No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT57170.11368533164916513No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG51020.10145575687843982No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)