FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008015475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008015475
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5780018
Sequences flagged as poor quality0
Sequence length0-101
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
445720.771139467039722No Hit
GCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCG90190.15603757635356844No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC67630.11700655603494661No Hit
GGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGCC65280.11294082475175682No Hit
GTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGG58910.10192009782668497No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)