FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016005

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016005
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4210228
Sequences flagged as poor quality0
Sequence length35-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN377170.8958422204213168No Hit
GCCCATTTGAGTATTTTGTTTTCAATTAGGGAGATAGTTGGTATTAGGAT83120.19742398748951365No Hit
GTGGGCTACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTGATGAGT62710.1489468028809841No Hit
CCCTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAA56230.1335557124222251No Hit
CTCTAGAGGGGGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTTC55350.13146556433523315No Hit
GGCTCTAGAGGGGGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATT53300.12659646935985416No Hit
GCTCTAGAGGGGGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTT48870.11607447387647414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)