FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016007

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016007
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4274969
Sequences flagged as poor quality0
Sequence length35-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN392160.9173399853893677No Hit
GCCCATTTGAGTATTTTGTTTTCAATTAGGGAGATAGTTGGTATTAGGAT83870.19618855715678873No Hit
GTGGGCTACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTGATGAGT64300.1504104474207883No Hit
CCCTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAA56670.13256236477972122No Hit
CTCTAGAGGGGGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTTC55670.13022316653056432No Hit
GGCTCTAGAGGGGGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATT52500.12280790808073697No Hit
GCTCTAGAGGGGGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTT50360.11780202382754121No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)