FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016011

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016011
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4326648
Sequences flagged as poor quality0
Sequence length35-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN411380.9508053347533703No Hit
GCCCATTTGAGTATTTTGTTTTCAATTAGGGAGATAGTTGGTATTAGGAT83380.1927126958328942No Hit
GTGGGCTACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTGATGAGT64470.14900680619269235No Hit
CCCTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAA57420.1327124369719931No Hit
CTCTAGAGGGGGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTTC56300.13012382796104513No Hit
GGCTCTAGAGGGGGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATT51290.11854442515314396No Hit
GCTCTAGAGGGGGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTT51070.11803594838313632No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)