FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016275

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016275
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4806242
Sequences flagged as poor quality0
Sequence length35-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2546075.297423642005542No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT168950.35152204154514066No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC59470.12373492637282933No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)