FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016279

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016279
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4964596
Sequences flagged as poor quality0
Sequence length35-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2663275.364525129537228No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT177970.3584783132403926No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC62170.12522670525456653No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)