FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016517

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016517
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5401649
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT121880.22563480152079488No Hit
CACCGCTAAGAGTCGTACGAGGTCGATTTGGCGAGGGCGCTCCCGACGAC84280.15602642822589916No Hit
CCACCGCTAAGAGTCGTACGAGGTCGATTTGGCGAGGGCGCTCCCGACGA61820.1144465329013418No Hit
GGCAGAGACAGAGGCGGCGGCCCGGGGGATCCGGTACCCCCAAGGCACGC58250.10783744001137431No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA55630.10298706931901722No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)