FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5503048
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT120260.21853343819643223No Hit
CACCGCTAAGAGTCGTACGAGGTCGATTTGGCGAGGGCGCTCCCGACGAC85410.15520489735870013No Hit
CCACCGCTAAGAGTCGTACGAGGTCGATTTGGCGAGGGCGCTCCCGACGA61050.11093851988934134No Hit
GGCAGAGACAGAGGCGGCGGCCCGGGGGATCCGGTACCCCCAAGGCACGC59440.1080128685048722No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA57510.10450572119305519No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)