FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016529

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016529
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5448687
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT123300.22629305005040665No Hit
CACCGCTAAGAGTCGTACGAGGTCGATTTGGCGAGGGCGCTCCCGACGAC85980.15779948453636627No Hit
CCACCGCTAAGAGTCGTACGAGGTCGATTTGGCGAGGGCGCTCCCGACGA61060.11206369534531899No Hit
GGCAGAGACAGAGGCGGCGGCCCGGGGGATCCGGTACCCCCAAGGCACGC58790.10789755403457751No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA55250.10140057595527142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)