FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016565

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016565
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5537579
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCGAGGTAGCTTTTATCCGTTGAGCGATGGCCCTCCCACGAGGTACCA317900.5740775887802233No Hit
CCGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGTAACTCC212260.38330830133529475No Hit
CCTCGACCTATTAGTATCAGTCAGCTACATACATTACTGCACTTACACCT202370.3654485109828682No Hit
CCCGAGGTAGCTTTTATCCGTTGAGCGATGGCCCTCCCACGAGGTACCAC167880.303164975163334No Hit
GCCCCCTAGCCCATTCAGTGCTCTACCTCCACTACTCATATCCGACGCTA110530.19959986123899995No Hit
CCTACACCTAGTATTCATCGTTTACGGCGTGGACTACCAGGGTATCTAAT103320.18657973096185174No Hit
GGCCCGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGTAAC100970.1823359991794248No Hit
GCCCGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGTAACT98850.1785076113586822No Hit
GTCCCGACTAACCCTCAGCGGACGAACCTTCCTGAGGAAACCTTAGATAT93430.16871994060942516No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT88900.16053947040755534No Hit
GCCCTCGACCTATTAGTATCAGTCAGCTACATACATTACTGCACTTACAC81880.14786245035962467No Hit
GATCAGTAGTGGTATCGGAATATCAACCGATTGTCCATCGCCTACGCCTT81350.14690535340443903No Hit
CCCTACACCTAGTATTCATCGTTTACGGCGTGGACTACCAGGGTATCTAA75650.1366120465279141No Hit
GCCCATTCAGTGCTCTACCTCCACTACTCATATCCGACGCTAGCCCTAAA74330.13422833335650833No Hit
GCCGCTACTAAGAAAATCGATTTTTCTTTCTCTTCCTCCAGGTACTTAGA71260.12868439438967824No Hit
CCCGACTAACCCTCAGCGGACGAACCTTCCTGAGGAAACCTTAGATATTC66910.12082897598390922No Hit
CCCTCGACCTATTAGTATCAGTCAGCTACATACATTACTGCACTTACACC65480.11824662004821962No Hit
CCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGT64810.11703670502940004No Hit
CTAGTATTCATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTTT64400.11629630927161491No Hit
GCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGAAAGTCGCC63620.11488775148851149No Hit
GCGACCGTACTCCCCAGGCGGAATACTTAATGCGTTAGCGGCGGCACAGA62540.11293744071190677No Hit
GCCCACCTAACAATGTCCTGTCACCAGATTCATGGCATCCAGTTAGAACC62350.11259433048268928No Hit
CCACTTAACTTACACTTTGGGACCTTAGCTGACGATCTGGGCTGTTTCCC62330.11255821361645585No Hit
GCTCCCTTTACGCCCAGTAAATCCGGACAACGCTTGCCACCTACGTATTA62030.11201646062295453No Hit
GCCCGACTTTCGTCCCTGCTCCACTTGTGGGTGTCGCAGTCAGGCTCCCT61600.111239947998936No Hit
CCCCTACACCTAGTATTCATCGTTTACGGCGTGGACTACCAGGGTATCTA59330.10714068368144275No Hit
CCCCCGAGGTAGCTTTTATCCGTTGAGCGATGGCCCTCCCACGAGGTACC57320.10351093862498396No Hit
CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCAGCTTTC56990.10291501033213252No Hit
GGCCTATTCTCTGCGGCCTGCTCTCACAGGCACCCCTTCTCCCTAAGTTA55880.10091052425617766No Hit
CGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGTAACTCCA55620.10044100499514319No Hit
ACTTAACTTACACTTTGGGACCTTAGCTGACGATCTGGGCTGTTTCCCTT55420.10007983633280898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)