FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5537579
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAAATAGAACCTGAAACCGTGTGCCTACAACCGGTCAAAGCCCCTTAT149060.2691790040376851No Hit
GGAGCGTCGTAATCGGGCTGAAGTCGTACCGTAAGGAGCGGTGGACTGAT127630.2304797818685747No Hit
GGTGAATGCCTTGGCATCAGGAGCCGATGAAGGACGTGATAAGCTGCGAT104750.18916208689754133No Hit
GTCGTACCGTAAGGAGCGGTGGACTGATTACGAGTGAGAATGTTGGCATT85990.15528446637059265No Hit
CAAACTTACCACCGAAGCTACGGGTTCACACTTATGTGTGAGCGGTAGAG81450.14708593773560613No Hit
CCGGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGTCTAG78870.14242686199149485No Hit
GACGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGAGCGATGAAGTTC77320.13962780485840473No Hit
GGACGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGAGCGATGAAGTT75040.13551048210779476No Hit
AGAACCTTACCTAGACTTGACATCTCCTGAATTACCATGTAATGTGGGAA67540.12196665727026196No Hit
AAGGGCGCATGGTGAATGCCTTGGCATCAGGAGCCGATGAAGGACGTGAT65920.1190411911053549No Hit
GCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGC62220.11235957085217205No Hit
CGGGTTCACACTTATGTGTGAGCGGTAGAGGAGCGTCGTAATCGGGCTGA57760.10430550968211921No Hit
GGCGGATTTTTAAGTGGGATGTGAAATACCCGGGCTCAACCTGGGTGCTG55960.10105499172111133No Hit
GTTGTAGTGCGAGTGAAGATGCTCGCTACCCGCGATTGGACGGAAAGACC55540.10029653753020949No Hit
GTGAAATACCCGGGCTCAACCTGGGTGCTGCATTCCAAACTGGAAATCTA55450.10013401163215911No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)