FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5466584
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCGAGGTAGCTTTTATCCGTTGAGCGATGGCCCTCCCACGAGGTACCA311080.5690573857458333No Hit
CCGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGTAACTCC209340.38294481526306007No Hit
CCTCGACCTATTAGTATCAGTCAGCTACATACATTACTGCACTTACACCT199240.3644689261154681No Hit
CCCGAGGTAGCTTTTATCCGTTGAGCGATGGCCCTCCCACGAGGTACCAC168300.30787050926135956No Hit
GCCCCCTAGCCCATTCAGTGCTCTACCTCCACTACTCATATCCGACGCTA107400.1964663855892455No Hit
CCTACACCTAGTATTCATCGTTTACGGCGTGGACTACCAGGGTATCTAAT101200.1851247506669613No Hit
GCCCGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGTAACT96620.17674657519211268No Hit
GGCCCGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGTAAC96020.1756489976189884No Hit
GTCCCGACTAACCCTCAGCGGACGAACCTTCCTGAGGAAACCTTAGATAT93710.1714233239624599No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT86130.15755726062198988No Hit
GATCAGTAGTGGTATCGGAATATCAACCGATTGTCCATCGCCTACGCCTT80830.14786199205939213No Hit
GCCCTCGACCTATTAGTATCAGTCAGCTACATACATTACTGCACTTACAC79740.14586805946821635No Hit
CCCTACACCTAGTATTCATCGTTTACGGCGTGGACTACCAGGGTATCTAA73940.13525814292801502No Hit
GCCCATTCAGTGCTCTACCTCCACTACTCATATCCGACGCTAGCCCTAAA72750.13308128074131853No Hit
GCCGCTACTAAGAAAATCGATTTTTCTTTCTCTTCCTCCAGGTACTTAGA71000.12988001281970604No Hit
CCCGACTAACCCTCAGCGGACGAACCTTCCTGAGGAAACCTTAGATATTC67980.12435553903498053No Hit
CCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGT64200.11744080032429759No Hit
GCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGAAAGTCGCC64020.1171115270523603No Hit
CCCTCGACCTATTAGTATCAGTCAGCTACATACATTACTGCACTTACACC63570.1162883438725171No Hit
CTAGTATTCATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTTT62570.11445904791730996No Hit
GCCCACCTAACAATGTCCTGTCACCAGATTCATGGCATCCAGTTAGAACC61840.11312366187000876No Hit
CCACTTAACTTACACTTTGGGACCTTAGCTGACGATCTGGGCTGTTTCCC60820.1112577799956975No Hit
GCTCCCTTTACGCCCAGTAAATCCGGACAACGCTTGCCACCTACGTATTA60720.11107485040017678No Hit
GCCCGACTTTCGTCCCTGCTCCACTTGTGGGTGTCGCAGTCAGGCTCCCT60710.11105655744062472No Hit
GCGACCGTACTCCCCAGGCGGAATACTTAATGCGTTAGCGGCGGCACAGA59630.109080917809001No Hit
CCCCTACACCTAGTATTCATCGTTTACGGCGTGGACTACCAGGGTATCTA58980.10789187543811637No Hit
GGCCTATTCTCTGCGGCCTGCTCTCACAGGCACCCCTTCTCCCTAAGTTA56410.10319058483323407No Hit
CCCCCGAGGTAGCTTTTATCCGTTGAGCGATGGCCCTCCCACGAGGTACC55840.10214788613876599No Hit
CCCACATCCTTTTCCACTTAACTTACACTTTGGGACCTTAGCTGACGATC55120.10083079305101686No Hit
CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCAGCTTTC54750.10015395354759024No Hit
CGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGTAACTCCA54730.1001173676284861No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)