FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016570

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016570
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5466584
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAAATAGAACCTGAAACCGTGTGCCTACAACCGGTCAAAGCCCCTTAT143430.2623759188553583No Hit
GGAGCGTCGTAATCGGGCTGAAGTCGTACCGTAAGGAGCGGTGGACTGAT123670.22622903078046547No Hit
GGTGAATGCCTTGGCATCAGGAGCCGATGAAGGACGTGATAAGCTGCGAT99180.1814295728374429No Hit
GTCGTACCGTAAGGAGCGGTGGACTGATTACGAGTGAGAATGTTGGCATT83540.1528193840980034No Hit
CAAACTTACCACCGAAGCTACGGGTTCACACTTATGTGTGAGCGGTAGAG76330.13963016026096003No Hit
CCGGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGTCTAG74750.13673987265173276No Hit
GACGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGAGCGATGAAGTTC71910.13154467213894455No Hit
GGACGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGAGCGATGAAGTT71530.13084953967596583No Hit
AAGGGCGCATGGTGAATGCCTTGGCATCAGGAGCCGATGAAGGACGTGAT63760.11663591010400647No Hit
AGAACCTTACCTAGACTTGACATCTCCTGAATTACCATGTAATGTGGGAA63240.11568467620729873No Hit
GCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGC59920.10961141363601107No Hit
GGCGGATTTTTAAGTGGGATGTGAAATACCCGGGCTCAACCTGGGTGCTG55180.1009405508083293No Hit
CGGGTTCACACTTATGTGTGAGCGGTAGAGGAGCGTCGTAATCGGGCTGA55000.10061127753639201No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)