FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5568994
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAAATAGAACCTGAAACCGTGTGCCTACAACCGGTCAAAGCCCCTTAT149530.26850450907291334No Hit
GGAGCGTCGTAATCGGGCTGAAGTCGTACCGTAAGGAGCGGTGGACTGAT128390.23054433170515176No Hit
GGTGAATGCCTTGGCATCAGGAGCCGATGAAGGACGTGATAAGCTGCGAT104580.1877897516140258No Hit
GTCGTACCGTAAGGAGCGGTGGACTGATTACGAGTGAGAATGTTGGCATT85740.15395958408287025No Hit
CCGGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGTCTAG80150.1439218645234669No Hit
CAAACTTACCACCGAAGCTACGGGTTCACACTTATGTGTGAGCGGTAGAG79710.14313177568515964No Hit
GACGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGAGCGATGAAGTTC78790.14147977175051724No Hit
GGACGAACGCTGGCGGCGTGCCTAACACATGCAAGTCGAGCGATGAAGTT75340.13528475699560819No Hit
AAGGGCGCATGGTGAATGCCTTGGCATCAGGAGCCGATGAAGGACGTGAT67380.12099133164804989No Hit
AGAACCTTACCTAGACTTGACATCTCCTGAATTACCATGTAATGTGGGAA66430.11928545801988655No Hit
GCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGC62870.11289292105540066No Hit
CGGGTTCACACTTATGTGTGAGCGGTAGAGGAGCGTCGTAATCGGGCTGA57030.10240628738332275No Hit
GGCGGATTTTTAAGTGGGATGTGAAATACCCGGGCTCAACCTGGGTGCTG55970.10050289154558256No Hit
GTGAAATACCCGGGCTCAACCTGGGTGCTGCATTCCAAACTGGAAATCTA55920.10041310872304765No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)