FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016575

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016575
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5556991
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCGAGGTAGCTTTTATCCGTTGAGCGATGGCCCTCCCACGAGGTACCA314290.5655758665076118No Hit
CCGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGTAACTCC211030.3797558786760677No Hit
CCTCGACCTATTAGTATCAGTCAGCTACATACATTACTGCACTTACACCT196800.354148495111833No Hit
CCCGAGGTAGCTTTTATCCGTTGAGCGATGGCCCTCCCACGAGGTACCAC166560.29973055561903916No Hit
GCCCCCTAGCCCATTCAGTGCTCTACCTCCACTACTCATATCCGACGCTA108320.19492563511439914No Hit
CCTACACCTAGTATTCATCGTTTACGGCGTGGACTACCAGGGTATCTAAT100550.18094324788361182No Hit
GCCCGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGTAACT98820.1778300522710942No Hit
GGCCCGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGTAAC98600.177434154563144No Hit
GTCCCGACTAACCCTCAGCGGACGAACCTTCCTGAGGAAACCTTAGATAT92940.16724878625860648No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT85280.1534643478817943No Hit
GATCAGTAGTGGTATCGGAATATCAACCGATTGTCCATCGCCTACGCCTT81130.14599627748182425No Hit
GCCCTCGACCTATTAGTATCAGTCAGCTACATACATTACTGCACTTACAC78670.14156942129292632No Hit
CCCTACACCTAGTATTCATCGTTTACGGCGTGGACTACCAGGGTATCTAA74880.1347491835059657No Hit
GCCCATTCAGTGCTCTACCTCCACTACTCATATCCGACGCTAGCCCTAAA71620.12888269928815793No Hit
GCCGCTACTAAGAAAATCGATTTTTCTTTCTCTTCCTCCAGGTACTTAGA71450.12857677833201456No Hit
CCCGACTAACCCTCAGCGGACGAACCTTCCTGAGGAAACCTTAGATATTC67230.12098274047951492No Hit
GCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGAAAGTCGCC64240.11560213072146419No Hit
CTAGTATTCATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTTT63840.11488231670700924No Hit
CCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGT63670.1145763957508659No Hit
CCCTCGACCTATTAGTATCAGTCAGCTACATACATTACTGCACTTACACC63630.1145044143494204No Hit
GCCCACCTAACAATGTCCTGTCACCAGATTCATGGCATCCAGTTAGAACC63000.11337070727665385No Hit
GCGACCGTACTCCCCAGGCGGAATACTTAATGCGTTAGCGGCGGCACAGA61640.11092333962750706No Hit
CCACTTAACTTACACTTTGGGACCTTAGCTGACGATCTGGGCTGTTTCCC61600.11085135822606156No Hit
GCCCGACTTTCGTCCCTGCTCCACTTGTGGGTGTCGCAGTCAGGCTCCCT61430.1105454372699182No Hit
GCTCCCTTTACGCCCAGTAAATCCGGACAACGCTTGCCACCTACGTATTA60550.10896184643811732No Hit
CCCCTACACCTAGTATTCATCGTTTACGGCGTGGACTACCAGGGTATCTA60060.10808007427041001No Hit
CGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGTAACTCCA56490.10165573419139962No Hit
CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACATCAGCTTTC55960.10070198062224682No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)