FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6117605
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA95280.15574722460832302No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG84760.1385509525377987No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG74680.12207391618125067No Hit
CAACTTAATATGACTAGCTTACACAATAGCTTTTATAGTAAAGATACCTC68960.11272385189955875No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)