FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016624

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016624
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6079980
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA91710.15083931197142095No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG83120.13671097602294743No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG74140.1219411905960217No Hit
CAACTTAATATGACTAGCTTACACAATAGCTTTTATAGTAAAGATACCTC65160.10717140516909596No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)