FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5686561
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCATTTGAGTATTTTGTTTTCAATTAGGGAGATAGTTGGTATTAGGAT167700.2949058314858488No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT132800.23353306154633705No Hit
GGGACTTCTAGGGGATTTAGCGGGGTGATGCCTGTTGGGGGCCAGTGCCC77790.13679621127778283No Hit
CCCTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAA74360.1307644462092291No Hit
GGCAAGATGAAGTGAAAGGTAAAGAATCGTGTGAGGGTGGGACTGTCTAC73350.12898832879837216No Hit
GTGTTGTCGTGCAGGTAGAGGCTTACTAGAAGTGTGAAAACGTAGGCTTG72410.12733530863381226No Hit
GGCCCATTTGAGTATTTTGTTTTCAATTAGGGAGATAGTTGGTATTAGGA69690.12255210134912824No Hit
GTTGTCGTGCAGGTAGAGGCTTACTAGAAGTGTGAAAACGTAGGCTTGGA58890.10355995477758877No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)