FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5702423
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCATTTGAGTATTTTGTTTTCAATTAGGGAGATAGTTGGTATTAGGAT170510.2990132440192529No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT131370.23037575430654655No Hit
GGGACTTCTAGGGGATTTAGCGGGGTGATGCCTGTTGGGGGCCAGTGCCC81580.1430619931211697No Hit
GGCAAGATGAAGTGAAAGGTAAAGAATCGTGTGAGGGTGGGACTGTCTAC75970.13322406983838272No Hit
GTGTTGTCGTGCAGGTAGAGGCTTACTAGAAGTGTGAAAACGTAGGCTTG75880.1330662421921348No Hit
CCCTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAA75400.13222449474547926No Hit
GGCCCATTTGAGTATTTTGTTTTCAATTAGGGAGATAGTTGGTATTAGGA70580.12377194746864623No Hit
GTTGTCGTGCAGGTAGAGGCTTACTAGAAGTGTGAAAACGTAGGCTTGGA60510.1061127874940179No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)