FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5801287
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA92620.15965422844965266No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG77210.1330911571863278No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG66180.1140781347311381No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)