FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5822520
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA93720.16096123328043527No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG79260.13612662558479832No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG68470.11759513063072348No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)