FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5813143
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCATTTGAGTATTTTGTTTTCAATTAGGGAGATAGTTGGTATTAGGAT167060.2873832623763083No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT131410.22605671321004836No Hit
GGGACTTCTAGGGGATTTAGCGGGGTGATGCCTGTTGGGGGCCAGTGCCC81990.14104246188335637No Hit
CCCTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAA77800.1338346570865365No Hit
GGCAAGATGAAGTGAAAGGTAAAGAATCGTGTGAGGGTGGGACTGTCTAC74040.12736655540729No Hit
GTGTTGTCGTGCAGGTAGAGGCTTACTAGAAGTGTGAAAACGTAGGCTTG72740.12513024365648667No Hit
GGCCCATTTGAGTATTTTGTTTTCAATTAGGGAGATAGTTGGTATTAGGA70310.12095006092229281No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)