FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016684

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016684
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6132861
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGC82190.13401575545247152No Hit
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT71720.11694378855154226No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGATAGGGTGTAGATCT64130.10456783546863364Illumina Single End PCR Primer 1 (97% over 34bp)
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG63890.10417650098379859No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)