FastQCFastQC Report
Wed 8 May 2024
EGAF00008016694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7653365
Total Bases772.9 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGC109500.14307432090328895No Hit
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT94790.12385401715454575No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA83260.10878874847861039No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)