FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4161564
Sequences flagged as poor quality0
Sequence length35-101
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN382730.919678274802454No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG61420.14758874307832343No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG60180.1446090940809753No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA52120.1252413755982126No Hit
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC50410.12113234351315996No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG42730.10267774327152003No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)