FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016924

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016924
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4208889
Sequences flagged as poor quality0
Sequence length35-101
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN406960.9669059934818903No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG61780.1467845790183585No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG60180.14298310076602164No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA50970.12110084157600734No Hit
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC50880.12088700842431341No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG43800.10406546715772261No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)