FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016928

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016928
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4151540
Sequences flagged as poor quality0
Sequence length35-101
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN397760.9581022945702077No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG60710.1462348911488267No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG58320.14047799129961414No Hit
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC50290.12113577130414255No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA49790.1199313989507508No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG41950.10104684044956812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)