FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008016930

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008016930
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4237351
Sequences flagged as poor quality0
Sequence length35-101
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN399040.9417204286357207No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG59850.14124390450543275No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG58390.13779835562359596No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA50210.1184938420253597No Hit
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC47200.11139034741280579No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)