FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008018391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008018391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6366302
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGC78930.12398092330524063No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA68420.10747212431958145No Hit
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT64940.10200584263831657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)