FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020062

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020062
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4981098
Sequences flagged as poor quality0
Sequence length0-101
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
367510.7378092139524258No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG107750.2163177676889714No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG97740.19622179688092867No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG54140.10869089505968361No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)