FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020169

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020169
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5920918
Sequences flagged as poor quality0
Sequence length0-101
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
337950.5707729781091379No Hit
CCTCGCTTCAACCTGGCCATGGATAGGTCACCCGGTTTCGGGTCTACGGC80730.1363471002300657No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT76880.12984473015839773No Hit
CCCCGAGGTAGCTTTTATCCGTTGAGCGATGGCCCTCCCACGAGGTACCA71050.11999828404987199No Hit
CCGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGTAACTCC68200.11518484126954638No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)