FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020200

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020200
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4791936
Sequences flagged as poor quality0
Sequence length0-101
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA135520.2828084515319069No Hit
129940.2711638886662927No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG97910.20432242834628844No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG87230.18203498544220958No Hit
CCCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGC68070.14205114592515425No Hit
CCCAATACCAAACGCCCCTCTTCGTCTGATCCGTCCTAATCACAGCAGTC67900.14169638325720543No Hit
CCTCAACACCACCTTCTTCGACCCCGCCGGAGGAGGAGACCCCATTCTAT59510.12418780217431952No Hit
CAAAGTATTTAGCTGACTCGCCACACTCCACGGAAGCAATATGAAATGAT58950.12301917220931165No Hit
TCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCA55010.11479702566979191No Hit
ATTTCACCTCCGCTACCATAATCATCGCTATCCCCACCGGCGTCAAAGTA54660.11406663194166199No Hit
GAACTATCAAACTCCTGAGCCAACAACTTAATATGACTAGCTTACACAAT53430.11149981969709112No Hit
AAAAGAACCATTTGGATACATAGGTATGGTCTGAGCTATGATATCAATTG50330.10503061810508321No Hit
GAATAATCTCCCATATTGTAACTTACTACTCCGGAAAAAAAGAACCATTT50110.10457151347597296No Hit
AATTAATTAACCACTCATTCATCGACCTCCCCACCCCATCCAACATCTCC49680.10367417260998477No Hit
GTCCTATCAATAGGAGCTGTATTTGCCATCATAGGAGGCTTCATTCACTG49080.10242206907604776No Hit
CAATTTCATCACAACAATTATCAATATAAAACCCCCTGCCATAACCCAAT48470.10114909714987848No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)