FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4573557
Sequences flagged as poor quality0
Sequence length0-101
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
120270.26296818865491345No Hit
NTGGGCTACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTGATGAGT62720.1371361502655373No Hit
NTGGTGTATGCATCGGGGTAGTCCGAGTAACGTCGGGGCATTCCGGATAG50320.11002377361865173No Hit
NTGTTGTCGTGCAGGTAGAGGCTTACTAGAAGTGTGAAAACGTAGGCTTG49310.10781542681112316No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)