FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7798348
Sequences flagged as poor quality0
Sequence length0-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGTAACTCC408170.5234057264436006No Hit
CCCCGAGGTAGCTTTTATCCGTTGAGCGATGGCCCTCCCACGAGGTACCA258260.3311727047831156No Hit
CCCGAGGTAGCTTTTATCCGTTGAGCGATGGCCCTCCCACGAGGTACCAC159870.20500495746022107No Hit
CCTCGATCTATTAGTATCGGTCAGCTGAACATGTTACCATGCTTACACCC145790.18694985143007212No Hit
GTCCCGACTAACCCTCAGCGGACGAACCTTCCTGAGGAAACCTTAGGTTT144570.18538541752689158No Hit
CCCCGGAGTACCTTTTATCCTTTGAGCGATGTCCCTTCCATACGGAAACA141640.18162821151351544No Hit
CGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGTAACTCCA128830.16520165553011995No Hit
CCCGTAGCTTCGGTGGTAAGTTTAGCCCCGTTACATTTTCGGCGCAAGAT128750.16509906970040322No Hit
CCCGACTAACCCTCAGCGGACGAACCTTCCTGAGGAAACCTTAGGTTTTC112150.14381251003417647No Hit
CCCCATTGTAACACGTGTGTAGCCCCGGACGTAAGGGCCGTGCTGATTTG104000.13336157863178202No Hit
CCTCGCTTCAACCTGGCCATGGATAGGTCACCCGGTTTCGGGTCTACGGC102160.13100210454829664No Hit
CTTAACTGTAATTCTTCCGCCGGCCTTAGGATTCTCTCCTCACCTACCTG99690.12783476705579183No Hit
CCCCGTTACATTTTCGGCGCAAGATCTCTCGACTAGTGAGCTATTACGCA91210.11696066910581575No Hit
GCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCGTATTA89110.1142677910757509No Hit
88780.11384462452816929No Hit
CCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGT87600.11233148353984716No Hit
GCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGAGAGTCGCC86800.11130562524267962No Hit
CCTACATTTGCTTTTCCACACGCTCCAGCAAAGCTCACGCTTCACCTTCG83370.10690725779357371No Hit
GCCCATTCAGTGCTCTACCTCCACTACTCATACTCGACGCTAGCCCTAAA80480.10320134469505593No Hit
GTTCGCTATCGGTCTCTCGGGAGTATTTAGCCTTACCGGATGGTCCCGGC78980.10127786038786675No Hit
GCCCGACTTTCGTCCCTGCTCCACTTGTGGGTGTCGCAGTCAGGCTCCCT78550.1007264615531392No Hit
GGTAAGTTTAGCCCCGTTACATTTTCGGCGCAAGATCTCTCGACTAGTGA78350.10046999697884733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)